PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04408.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 259aa    MW: 28967.5 Da    PI: 4.4599
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04408.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.31.7e-1755104255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr +k +g+Wv+e+r+p   +k+ r++lg+f tae Aa+a++ a+++l+g
  Rsa1.0_04408.1_g00002.1  55 IYRGVRLRK-SGKWVCEVREP---NKKSRIWLGTFKTAEIAARAHDVAALALRG 104
                              69******9.7******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.48E-3054114No hitNo description
PfamPF008471.3E-1254104IPR001471AP2/ERF domain
PROSITE profilePS5103221.60155112IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-2055114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3055114IPR001471AP2/ERF domain
SMARTSM003805.1E-2955118IPR001471AP2/ERF domain
PRINTSPR003671.9E-85667IPR001471AP2/ERF domain
PRINTSPR003671.9E-87894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFPTMSSFS SSSEMLSSEN ESPVMTGADY SPMLAASCPK KPAGRKKFQE TRHPIYRGVR  60
LRKSGKWVCE VREPNKKSRI WLGTFKTAEI AARAHDVAAL ALRGRGACLN FADSAWRLRI  120
PETTCAKEIQ KAAAEAALAF EAEKSDHGMN MEDTTAVASQ VEVNDTMTDH GVDIEETMVE  180
AIFTEEQREG FNMAEETRVE GVLTEEQSNG FYMDEEWMFG MPTLLADMAE GMLLPPPSVQ  240
WGHNNNDFEG DVDMNLWNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3707320.0AF370732.1 Brassica oleracea clone 534 CBF-like protein mRNA, complete cds.
GenBankAF3707330.0AF370733.1 Brassica napus clone 662 CBF-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302772.11e-147dehydration-responsive element-binding protein 1B-like
RefseqXP_013602884.11e-147PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9SYS61e-109DRE1C_ARATH; Dehydration-responsive element-binding protein 1C
TrEMBLQ5K6K41e-147Q5K6K4_BRAOL; CBF-like protein
STRINGBra010460.1-P1e-141(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35528187
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.19e-81C-repeat/DRE binding factor 1